MDA of marine diplonemid cell 13 - SRA

SRX2014513: MDA of marine diplonemid cell 13
1 ILLUMINA (Illumina MiSeq) run: 4.1M spots, 2.5G bases, 1.2Gb downloads

Design: Single protist cells were isolated from sea water. Single-cell genome amplification via MDA using REPLI-g UltraFast Mini Kit. Sample cleanup, library preparation (Illumina TruSeq), and sequencing (Illumina MiSeq PE 300 bp) were conducted at McGill University and Gnome Qubec Innovation Centre (samples 3, 13, 21, 27, 37, and 47) and University of California, Los Angeles Genotyping and Sequencing (samples 1sb, 4sb, 9sb, 21sb, and 21).

Submitted by: University of British Columbia

Study: Single-cell genomic analysis of 10 'wild-caught' diplonemids

PRJNA338474 • SRP081436 • All experiments • All runs

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In this study, we generated single-cell genomic data from 10 marine diplonemids, isolated off of the California coast. Marine diplonemids are increasingly being recognized as diverse and abundant constituents of oceanic plankton, but no one had knowingly observed (or derived genomic information from) these cells until the present study.

Sample: A planktonic diplonemid isolated in the Northeastern Pacific Ocean (California)

SAMN05559136 • SRS1611218 • All experiments • All runs

Organism: Diplonemida sp. 13 RG-2016

Library:

Name: MI.M02588_0006.001.Index_5.13

Instrument: Illumina MiSeq

Strategy: WGA

Source: GENOMIC

Selection: MDA

Layout: PAIRED

Runs: 1 run, 4.1M spots, 2.5G bases, 1.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR4022269	4,095,492	2.5G	1.2Gb	2016-08-17

ID:: 2911806

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